The traits below have been used in soybean GWAS and/or QTL studies.
Click on a "GWAS" or "QTL" link to populate a query in the Trait Association Search page.
| Canopy wilt | - | QTL | Flooding yield index | - | QTL | R/V photo-thermal sensitivity | - | QTL |
| Drought index | - | QTL | Leaf Damage | - | QTL | Salt tolerance | - | QTL |
| Drought tolerance | - | QTL | mqCanopy wilt | - | QTL | - | - | |
| Flood tolerance | - | QTL | Plant damage | - | QTL | - | - |
| Row spacing response | - | QTL | Stem diameter | GWAS | QTL | Stem weight | - | QTL |
| Shoot fresh to dry weight ratio | - | QTL | Stem length | - | QTL | Total growth duration | - | QTL |
| Shoot length | - | QTL | Stem shape | GWAS | - | Trailing growth | - | QTL |
| Shoot weight | - | QTL | Stem strength | - | QTL | Vegetative period | - | QTL |
| Sprout yield | - | QTL | Stem termination type | GWAS | - | WUE | - | QTL |
| Hilum color | GWAS | - | P aquisition efficiency | - | QTL | Pod color | - | QTL |
| Iron deficiency chlorosis | GWAS | - | P concentration | - | QTL | Pubescence color | GWAS | - |
| Leaflet chlorophyll | GWAS | QTL | P use efficiency | - | QTL | Pubescence density | - | QTL |
| Leaflet N | - | QTL | Petiole color | - | QTL | Pubescence length | - | QTL |
| Leaflet P | - | QTL | pH sensitivity | - | QTL | Root P | - | QTL |
| Net photosyn rate | - | QTL | Plant P | - | QTL | Shoot P | - | QTL |
| cqR8 Full maturity | - | QTL | Photoperiod insensitivity | - | QTL | Pods per node | - | QTL |
| Days to flower | GWAS | - | Pod dehiscence | - | QTL | R8 full maturity | GWAS | - |
| First flower | GWAS | QTL | Pod maturity | - | QTL | Reproductive period | GWAS | QTL |
| Flower color | GWAS | QTL | Pod number | GWAS | QTL | Reproductive period photo-thermal sensitivity | - | QTL |
| Flower form | - | QTL | Pod shattering | GWAS | - | Reproductive stage length | GWAS | QTL |
| Flower number | - | QTL | Pod weight | - | QTL | Reproductive to vegetative period ratio | - | QTL |
| Lateral root size | - | QTL | Root area development | - | QTL | Root morphology | - | QTL |
| Node number | GWAS | QTL | Root density | - | QTL | Root nodule number | - | QTL |
| Nodule number | - | QTL | Root diameter | - | QTL | Root nodule weight | - | QTL |
| Nodule size | - | QTL | Root diameter change | - | QTL | Root to Shoot weight ratio | - | QTL |
| Nodule weight | - | QTL | Root length | - | QTL | Root volume | - | QTL |
| Nodule weight per plant | - | QTL | Root length development | - | QTL | Root weight | - | QTL |
| Root area | - | QTL | Root length plus Rhizobia | - | QTL | Root width | - | QTL |
| Branch number | GWAS | - | Internode length | GWAS | QTL | Lodging | GWAS | QTL |
| Branching | - | QTL | Leaflet area | GWAS | QTL | mqPlant height | - | QTL |
| Canopy height | - | QTL | Leaflet ash | - | QTL | Plant height | GWAS | QTL |
| Canopy width | GWAS | QTL | Leaflet length | GWAS | QTL | Plant height to Lodging ratio | - | QTL |
| Hypocotyl length | - | QTL | Leaflet shape | GWAS | QTL | Plant weight | - | QTL |
| Hypocotyl weight | - | QTL | Leaflet weight | - | QTL | - | - | |
| Interbranch length | GWAS | - | Leaflet width | GWAS | QTL | - | - |
| Asian Soybean Rust | - | QTL | Japanese beetle resistance | - | QTL | SCN | GWAS | QTL |
| Bean pyralid | - | QTL | Jav root-knot nematode | - | QTL | SDS | - | QTL |
| BSR | - | QTL | Necrosis | - | QTL | SDS disease incidence | - | QTL |
| Common cutworm | - | QTL | Peanut root-knot nematode | - | QTL | SDS disease index | - | QTL |
| Corn earworm | - | QTL | Phomopsis seed decay | - | QTL | SDS dry matter retention | GWAS | - |
| cqSCN | - | QTL | Phytoph | - | QTL | SDS root retention | GWAS | - |
| cqSDS | - | QTL | Pod borer | - | QTL | Southern root-knot nematode | - | QTL |
| Foxglove aphid | - | QTL | Rag | - | QTL | Soybean mosaic virus | GWAS | QTL |
| Fusarium lesion length | - | QTL | Rhizoc root and hypocot rota | - | QTL | Tobacco ring spot virus | - | QTL |
| Fusarium root rot | - | QTL | Rhizoc root and hypocot rotb | - | QTL | Tobacco ringspot virus | GWAS | - |
| Indo soy dwarf virus | - | QTL | Sclero | GWAS | QTL | - | - |
| Acid detergent fiber | - | QTL | Chlorophyll flourescence ETo/TRo | - | QTL | Leaflet trigonelline | - | QTL |
| Acid phosphatase activity | - | QTL | Chlorophyll flourescence PIabs | - | QTL | Neutral detergent fiber | - | QTL |
| Al tolerance | - | QTL | Chlorophyll flourescence REo/Eto | - | QTL | Somatic emb per explant | - | QTL |
| Carbon isotope discrimination | - | QTL | Chlorophyll flourescence TRo/ABS | - | QTL | Somatic embryogen effic | - | QTL |
| Cellwall polysacch composition | - | QTL | Chlorosis | - | QTL | Somatic embryogenesis | - | QTL |
| Chlorimuron sensitivity | - | QTL | Fe effic | - | QTL | - | - | |
| Chlorophyll flourescence ABS/RC | - | QTL | Leaf carotenoid content | GWAS | - | - | - |
| Seed abortion | - | QTL | Seed N at R7 | - | QTL | Seed winter hardiness | - | QTL |
| Seed N at R5 | - | QTL | Seed set | GWAS | QTL | - | - | |
| Seed N at R6 | - | QTL | Seed viability | - | QTL | - | - |
| cqSeed agglutinin | - | QTL | Seed daidzein | - | QTL | Seed oil | GWAS | QTL |
| cqSeed oil | - | QTL | Seed fucose | - | QTL | Seed oil to protein ratio | GWAS | QTL |
| cqSeed phytate | - | QTL | Seed galactose | - | QTL | Seed oleic | - | QTL |
| cqSeed protein | - | QTL | Seed genistein | - | QTL | Seed oligosaccharide | - | QTL |
| Crude fat | - | QTL | Seed Glu | - | QTL | Seed palmitic | - | QTL |
| Crude protein | - | QTL | Seed glucose | - | QTL | Seed palmitic plus stearic | - | QTL |
| mqSeed oil | - | QTL | Seed Gly | - | QTL | Seed pectin | - | QTL |
| Seed acidic fraction | - | QTL | Seed glycinin | - | QTL | Seed Phe | - | QTL |
| Seed agglutinin | - | QTL | Seed glycinin plus beta-conglycinin | - | QTL | Seed phytate | - | QTL |
| Seed Ala | - | QTL | Seed glycinin to beta-conglycinin ratio | - | QTL | Seed Pro | - | QTL |
| Seed alpha-linolenic acid | GWAS | - | Seed glycitein | - | QTL | Seed protein | GWAS | QTL |
| Seed amino acids | GWAS | - | Seed His | - | QTL | Seed Ser | - | QTL |
| Seed anthocyanin content | - | QTL | Seed Ile | - | QTL | Seed starch | - | QTL |
| Seed antioxidant content | - | QTL | Seed isoflavone | GWAS | QTL | Seed stearic | GWAS | QTL |
| Seed arabinose plus galactose | - | QTL | Seed Leu | - | QTL | Seed sucrose | - | QTL |
| Seed Arg | - | QTL | Seed linoleic | - | QTL | Seed Thr | - | QTL |
| Seed Asp | - | QTL | Seed linolenic | - | QTL | Seed tocopherol | - | QTL |
| Seed basic fraction | - | QTL | Seed long-chain fatty acid | GWAS | - | Seed total isoflavone | - | QTL |
| Seed cadmium | - | QTL | Seed Lys | - | QTL | Seed Trp | - | QTL |
| Seed calcium | - | QTL | Seed Met | - | QTL | Seed Tyr | - | QTL |
| Seed conglycinin | - | QTL | Seed Met plus Cys | - | QTL | Seed Val | - | QTL |
| Seed Cys | - | QTL | Seed nickel | - | QTL | - | - |
| Seed coat color | GWAS | QTL | Seed height | GWAS | QTL | Seed volume | GWAS | QTL |
| Seed coat cracking | - | QTL | Seed height to width ratio | - | QTL | Seed weight | GWAS | QTL |
| Seed coat hardness | - | QTL | Seed length | - | QTL | Seed width | - | QTL |
| Seed coat luster | GWAS | - | Seed length to height ratio | - | QTL | Seed width to height ratio | GWAS | - |
| Seed fill | - | QTL | Seed length to thickness ratio | GWAS | QTL | Seed width to thickness ratio | - | QTL |
| Seed fragrance | - | QTL | Seed length to width ratio | - | QTL | - | - | |
| Seed hardness | - | QTL | Seed thickness | GWAS | QTL | - | - |
| cqSeed weight | - | QTL | Seed yield | GWAS | QTL | Total seed number | GWAS | - |
| cqSeed yield | - | QTL | Seed yield to Plant height ratio | - | QTL | - | - | |
| Seed number | - | QTL | Seed yield to weight ratio | - | QTL | - | - | |
| Seed weight per plant | - | QTL | Seeds per plant | GWAS | QTL | - | - |