Genome browsers

Genome browsers can be accessed from the GENOMICS tab, with browsers listed under each accession -- or directly from the links below; legacy GBrowse first, then JBrowse.

GBrowse instances (legacy; see newer JBrowse instances below). The largest track collection is in Wm82.a2.
(Click ** for unframed links: useful for bookmarking and sharing track configurations and views)
Glycine max

Wm82.a2 ** , Wm82.a6 ** , Wm82.a4 ** , Wm82.a1 ** , Fiskeby III ** , Lee ** , Zh13 **

Glycine soja

PI 483463 ** , W05 **

JBrowse instances for Glycine max accessions

Reference - Williams 82

Wm82.gnm6

Glycine max accession Williams 82 (ISU01) genome assembly v6; renamed from Wm82 ISU-01 v2.1; JGI name Wm82.a6.v1

Wm82.gnm5

Glycine max accession Williams 82 (Wm82), genome assembly 5 doi.org/10.1002/tpg2.20382

Wm82.gnm4

Glycine max accession Williams 82 genome assembly v4.0; JGI name Wm82.a4.v1 doi.org/10.1111/tpj.14500

Wm82.gnm2

Glycine max accession Williams 82 genome assembly v2.0; JGI name Wm82.a2.v1 doi.org/10.1038/nature08670

Wm82.gnm1

Glycine max accession Williams genome assembly v1.0; JGI name Glycine max v1.1 doi.org/10.1038/nature08670

Reference - Lee

Lee.gnm3

Glycine max accession Lee, genome assembly 3 doi.org/10.1002/tpg2.20382

Lee.gnm2

Glycine max genotype Lee genome assembly v2.0 doi.org/10.1016/j.jare.2021.10.009

Lee.gnm1

Glycine max accession Lee Genome assembly 1; JGI name Lee v1.1 doi.org/10.1111/tpj.14500

Reference - Fiskeby III

FiskebyIII.gnm1

Glycine max genotype Fiskeby III genome assembly 1; JGI name Fiskeby v1.1

Reference - Zhonghuang 13

Zh13.gnm2

Genome assembly version 2 files for cultivar Zhonghuang 13, Shen et al. (2019) doi.org/10.1007/s11427-019-9822-2

Zh13.gnm1

Genome assembly files for cultivar Zhonghuang 13, Shen et al. (2018) doi.org/10.1007/s11427-018-9360-0

Reference - Hwangkeum

Hwangkeum.gnm1

Glycine max genotype Hwangkeum genome assembly v1.0 doi.org/10.1093/g3journal/jkab272

Reference - Jidou 17

JD17.gnm1

Glycine max accession Jidou 17 (JD17), genome assembly 1 doi.org/10.1093/g3journal/jkac017

Chu, Peng et al., 2021

Citation (DOI) for this accession group: doi.org/10.1038/s41597-021-00947-2

Hefeng25_IGA1002.gnm1

Genome assembly files for cultivar Hefeng 25 (Hefeng25_IGA1002 in publication; WHFS_GmHF25_1.0 in the GenBank assembly record)

Huaxia3_IGA1007.gnm1

Genome assembly files for cultivar Huaxia3 (Huaxia3_IGA1007 in publication; WHFS_GmHX3_1.0 in the GenBank assembly record)

Jinyuan_IGA1006.gnm1

Genome assembly files for cultivar Jinyuan (Jinyuan_IGA100 in the publication; 6HFS_GmJY_1.0 in the GenBank assembly record)

Wenfeng7_IGA1001.gnm1

Genome assembly files for cultivar Wenfeng 7 (Wenfeng7_IGA1001 in publication; WHFS_GmWF7_1.0 in the GenBank assembly record); Chu et al. (2021)

Wm82_IGA1008.gnm1

Genome assembly files for cultivar Williams 82 (Wm82_IGA1008 in publication; WHFS_GmW82_1.0 in the GenBank assembly record)

Zh13_IGA1005.gnm1

Genome assembly files for cultivar Zhonghuang 13 (Zh13_IGA1005 in publication; WHFS_GmZH13_1.0 in the GenBank assembly record)

Zh35_IGA1004.gnm1

Genome assembly files for cultivar Zhonghuang 35 (Zh35_IGA1004 in publication; WHFS_GmZH35_1.0 in the GenBank assembly record)

Liu, Du et al., 2020

Citation (DOI) for this accession group: doi.org/10.1016/j.cell.2020.05.023

58-161.gnm1

Genome assembly for Glycine max accession 58-161 (SoyL04)

Amsoy.gnm1

Genome assembly for Glycine max accession Amsoy (SoyC05)

DongNongNo_50.gnm1

Genome assembly for Glycine max accession DongNongNo_50 (SoyC12)

FengDiHuang.gnm1

Genome assembly for Glycine max accession FengDiHuang (SoyL07)

HanDouNo_5.gnm1

Genome assembly for Glycine max accession HanDouNo_5 (SoyC09)

HeiHeNo_43.gnm1

Genome assembly for Glycine max accession HeiHeNo_43 (SoyC13)

JiDouNo_17.gnm1

Genome assembly for Glycine max accession JiDouNo_17 (SoyC11)

JinDouNo_23.gnm1

Genome assembly for Glycine max accession JinDouNo_23 (SoyC07)

JuXuanNo_23.gnm1

Genome assembly for Glycine max accession JuXuanNo_23 (SoyC03)

KeShanNo_1.gnm1

Genome assembly for Glycine max accession KeShanNo_1 (SoyC14)

PI_398296.gnm1

Genome assembly for Glycine max accession PI_398296 (SoyL05)

PI_548362.gnm1

Genome assembly for Glycine max accession PI_548362 (SoyC10)

QiHuangNo_34.gnm1

Genome assembly for Glycine max accession QiHuangNo_34 (SoyC08)

ShiShengChangYe.gnm1

Genome assembly for Glycine max accession ShiShengChangYe (SoyL09)

TieFengNo_18.gnm1

Genome assembly for Glycine max accession TieFengNo_18 (SoyC02)

TieJiaSiLiHuang.gnm1

Genome assembly for Glycine max accession TieJiaSiLiHuang (SoyL08)

TongShanTianEDan.gnm1

Genome assembly for Glycine max accession TongShanTianEDan (SoyL03)

WanDouNo_28.gnm1

Genome assembly for Glycine max accession WanDouNo_28 (SoyC04)

XuDouNo_1.gnm1

Genome assembly for Glycine max accession XuDouNo_1 (SoyC01)

YuDouNo_22.gnm1

Genome assembly for Glycine max accession YuDouNo_22 (SoyC06)

ZhangChunManCangJin.gnm1

Genome assembly for Glycine max accession ZhangChunManCangJin (SoyL06)

Zhutwinning2.gnm1

Genome assembly for Glycine max accession Zhutwinning2 (SoyL01)

ZiHuaNo_4.gnm1

Genome assembly for Glycine max accession ZiHuaNo_4 (SoyL02)

Wm82_NJAU.gnm1

Glycine max accession Williams 82 from Nanjing Agricultural University (Wm82-NJAU), genome assebly v1 doi.org/10.1016/j.molp.2023.08.012

JBrowse instances for Glycine soja accessions

Valliyodan, Cannon et al., 2019

Citation (DOI) for this accession group: doi.org/10.1111/tpj.14500

PI483463.gnm1

Glycine soja accession PI 483463 genome assembly, v1.0; JGI name Glycine soja v1.1

Xie, Chung et al., 2019

Citation (DOI) for this accession group: doi.org/10.1038/s41467-019-09142-9

W05.gnm1

Genome assembly files for cultivar W05 from Xie, Lam et al. (2019): A reference-grade wild soybean genome

Chu, Peng et al., 2021

Citation (DOI) for this accession group: doi.org/10.1038/s41597-021-00947-2

F_IGA1003.gnm1

Genome assembly files for Glycine soja F (F_IGA1003 in publication; WHFS_GsojaF_1.0 in the GenBank assembly record)

Liu, Du et al., 2020

Citation (DOI) for this accession group: doi.org/10.1016/j.cell.2020.05.023

PI_549046.gnm1

Genome assembly for Glycine soja accession PI_549046 (SoyW02)

PI_562565.gnm1

Genome assembly for Glycine soja accession PI_562565 (SoyW01)

PI_578357.gnm1

Genome assembly for Glycine soja accession PI_578357 (SoyW03)